Parallel hardware for sequence comparison and alignment
نویسندگان
چکیده
منابع مشابه
Parallel hardware for sequence comparison and alignment
Sequence comparison, a vital research tool in computational biology, is based on a simple O(n2) algorithm that easily maps to a linear array of processors. This paper reviews and compares high-performance sequence analysis on general-purpose supercomputers and single-purpose reconfigurable, and programmable co-processors. The difficulty of comparing hardware from published performance figures i...
متن کاملParallel Hardware for Sequence Comparison
Sequence comparison, a vital research tool in computational biology, is based on a simple O(n 2) algorithm that easily maps to a linear array of processors. This paper reviews and compares high-performance sequence analysis on general-purpose supercomputers and single-purpose, reconngurable, and programmable co-processors. The diiculty of comparing hardware from published performance gures is a...
متن کاملParallel Sequence Comparison and Alignment
Sequence comparison, a vital research tool in computational biology, is based on a simple O(n) algorithm that easily maps to a linear array of processors. This paper reviews and compares high-performance sequence analysis on general-purpose supercomputers and single-purpose, recon gurable, and programmable co-processors. The di culty of comparing hardware from published performance gures is als...
متن کاملParallel Sequence Alignment Algorithm for Clustering System
Sequence alignment is one of the most important fundamental operations in bioinformatics. It has been successfully applied to predict the function, structure and evolution of biological sequences. In this paper, the sequence alignment algorithms based on dynamic programming are analyzed and compared. We present a parallel algorithm for pairwise alignment and implement it on a clustering system ...
متن کاملHardalign: a Parallel Pairwise Alignment Hardware
This paper describes the design and implementation of a parallel pairwise alignment hardware, implemented in a FPGA device. This system is aimed at aligning pairs of proteins, using a dynamic programming algorithm. The alignment is done in parallel thanks to a pipelined approach. All functional blocks are described in detail. Experiments were done to access the performance of the system for up ...
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ژورنال
عنوان ژورنال: Bioinformatics
سال: 1996
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/12.6.473